Unit 2 · Spec 3.3.6

Organic Analysis: Infrared Spectroscopy & Mass Spectrometry

Infrared absorption ranges, the fingerprint region, impurities, infrared and global warming, high-resolution mass spectrometry, and test-tube reactions for functional groups.

1. Infrared (IR) Spectroscopy

Covalent bonds vibrate naturally by stretching and bending. Each bond absorbs infrared radiation matching its natural vibrational frequency. Absorption peaks appear as dips on the transmittance scale:

Annotated infrared spectrum fingerprint region below 1500 cm⁻¹ 4000350030002500200015001000500 100500 Wavenumber / cm⁻¹ Transmittance / % O-H (alcohol) broad, 3230-3550 C-H 2850-3300 C=O (carbonyl) sharp, 1680-1750
Bond Type Functional Group Wavenumber Range (cm⁻¹) Peak Appearance & Diagnostics
O-H Alcohols 3230 - 3550 Broad, smooth trough due to hydrogen bonding.
O-H Carboxylic acids 2500 - 3000 Very broad, jagged trough overlapping C-H stretching.
C=O Aldehydes, Ketones, Carboxylic acids, Esters 1680 - 1750 Sharp, intense, deep spike (unmistakable carbonyl peak).
C=C Alkenes 1620 - 1680 Moderate sharp absorption.
C-H Alkanes, Alkenes, Arenes 2850 - 3300 Sharp, multi-pointed absorption.

2. The Fingerprint Region and Impurities

Fingerprint Region

The complex region of an infrared spectrum below 1500 cm⁻¹, caused by complex bending vibrations of the whole molecule.

While the functional group region (1500-4000 cm⁻¹) identifies specific bonds, the fingerprint region is unique to an individual compound. Unknown molecules are positively confirmed by computer comparison of their fingerprint spectrum against a library of known reference spectra.

Using IR to Identify Impurities

A pure compound gives only the peaks expected for its bonds. Extra peaks show an impurity.

Worked Example: Unreacted Alcohol
A student oxidises propan-1-ol to propanal by distillation. The IR spectrum of the product has a strong peak at 1730 cm⁻¹ and a broad peak at 3230 to 3550 cm⁻¹. What does this show?
  • The peak at 1730 cm⁻¹ is C=O (1680 to 1750 cm⁻¹), so the aldehyde has formed.
  • An aldehyde has no O-H bond. The broad O-H peak at 3230 to 3550 cm⁻¹ shows unreacted alcohol in the sample.

3. Infrared Radiation and Global Warming

  • The Earth's surface absorbs energy from the Sun and emits infrared radiation.
  • CO₂, CH₄ and water vapour have bonds (C=O, C-H and O-H) that absorb infrared radiation.
  • The absorbed energy is re-emitted in all directions. Some goes back towards the Earth, which warms the atmosphere.
  • More of these gases in the atmosphere means more infrared is absorbed, which contributes to global warming.

4. Mass Spectrometry in Organic Analysis

In electron impact mass spectrometry, an intact organic molecule loses one electron to form a radical cation known as the molecular ion (\(M^{\bullet+}\)):

\[ \text{M} + e^- \rightarrow M^{\bullet+} + 2e^- \]

The \(m/z\) ratio of the molecular ion peak gives the relative molecular mass (\(M_r\)) of the intact molecule.

High-Resolution Mass Spectrometry

Standard low-resolution mass spectrometry measures \(m/z\) to the nearest integer. High-resolution spectrometers measure masses to four or five decimal places. This differentiates compounds that have identical integer \(M_r\) values (using 5 d.p. masses):

  • Propanal (C₃H₆O): Accurate mass = 3(12.00000) + 6(1.00782) + 15.99491 = 58.04183.
  • Butane (C₄H₁₀): Accurate mass = 4(12.00000) + 10(1.00782) = 58.07820.
Worked Example: Choosing the Molecular Formula
Precise masses: ¹H 1.0078, ¹²C 12.0000, ¹⁶O 15.9949, ¹⁴N 14.0031. A compound has a molecular ion at m/z = 58.0417. Is it C₃H₆O, C₄H₁₀ or C₂H₂O₂?
Formula Working Precise Mr
C₃H₆O36.0000 + 6.0468 + 15.994958.0417
C₄H₁₀48.0000 + 10.078058.0780
C₂H₂O₂24.0000 + 2.0156 + 31.989858.0054

Only C₃H₆O matches 58.0417, so the compound is C₃H₆O.

5. The [M+1] Peak and Carbon Counting (Beyond the OxfordAQA specification)

Beyond the OxfordAQA specification: 9620 does not require the [M+1] peak. This section is background only.

Note: The [M+1] Peak is NOT an Impurity

Directly to the right of the molecular ion peak \(M\), a tiny peak is observed at \([M+1]\). This peak arises from the natural 1.1% abundance of the carbon-13 isotope (¹³C) in the molecule.

The number of carbon atoms (\(n\)) in the molecule can be deduced by comparing the peak heights:

\[ n = \frac{\text{Height of }[M+1]\text{ peak}}{\text{Height of }M\text{ peak}} \times \frac{100}{1.1} \]

6. Chemical Identification Tests Summary

Functional Group Test Reagent Positive Observation
Alkene (C=C) Bromine water (\(\text{Br}_2(aq)\)) Orange to colourless.
Halogenoalkane (R − X) Warm with \(\text{NaOH}(aq)\), acidify with HNO₃, add \(\text{AgNO}_3(aq)\) AgCl white ppt; AgBr cream ppt; AgI yellow ppt.
Primary or secondary alcohol (−OH) Acidified potassium dichromate(VI), warm Orange to green. (Tertiary alcohol: no change, stays orange.)
Aldehyde (−CHO) Tollens' reagent, warm
or Fehling's solution, warm
Silver mirror forms on the glass.
Blue solution gives a brick-red precipitate.
Carboxylic acid (−COOH) Sodium hydrogencarbonate (\(\text{NaHCO}_3\)) or sodium carbonate (\(\text{Na}_2\text{CO}_3\)) Effervescence; the gas (CO₂) turns limewater cloudy.

Required practical 5: tests for alcohols, aldehydes, alkenes and carboxylic acids

See how each test is carried out, with the exact observations to write, on the RP5 page.

Go deeper

These UK AQA pages cover the same ideas in more detail. They may include content that is not in 9620.

7. Practice Questions

Practice Problem (4 Marks)
An organic compound X has the molecular formula C₃H₆O. Its infrared spectrum shows a sharp, strong absorption band at 1715 cm⁻¹ and no broad absorption between 3200 and 3600 cm⁻¹. When X is warmed with Tollens' reagent, no silver mirror forms. Deduce the structure of X, name the compound, and justify your answer using the data provided.
Show Answer & Mark Scheme

Deduction:

  • Absorption at 1715 cm⁻¹ indicates the presence of a carbonyl group (C=O). (1 mark)
  • Absence of absorption between 3200-3600 cm⁻¹ confirms compound X is not an alcohol. (1 mark)
  • Negative Tollens' test confirms X is a ketone, not an aldehyde. (1 mark)
  • With formula C₃H₆O, the only possible ketone is propanone (CH₃COCH₃). (1 mark)
Practice Problem 2 (2 Marks)
Precise masses: ¹H 1.0078, ¹²C 12.0000, ¹⁶O 15.9949. A compound has a molecular ion at m/z = 44.0261. Show that it is C₂H₄O and not C₃H₈ or CO₂.
Show Answer & Mark Scheme

Answer:

  • C₂H₄O = 24.0000 + 4.0312 + 15.9949 = 44.0261. (1 mark)
  • C₃H₈ = 36.0000 + 8.0624 = 44.0624 and CO₂ = 12.0000 + 31.9898 = 43.9898, so neither matches. (1 mark)
Practice Problem 3 (2 Marks)
A student oxidises propan-2-ol to propanone. The IR spectrum of the product has a strong peak at 1715 cm⁻¹ and a broad peak at 3400 cm⁻¹. What does each peak show?
Show Answer & Mark Scheme

Answer:

  • 1715 cm⁻¹ is C=O, so propanone has formed. (1 mark)
  • The broad peak at 3400 cm⁻¹ is O-H (alcohol). Propanone has no O-H, so the product contains unreacted propan-2-ol as an impurity. (1 mark)
Practice Problem 4 (3 Marks)
Explain how methane in the atmosphere contributes to global warming.
Show Answer & Mark Scheme

Answer:

  • The C-H bonds in methane absorb infrared radiation emitted by the Earth's surface. (1 mark)
  • The energy is re-emitted in all directions. (1 mark)
  • Some is re-emitted back towards the Earth, which warms the atmosphere. (1 mark)
Practice Problem 5 (2 Marks)
Describe a test to show that a liquid is propanoic acid and not propan-1-ol.
Show Answer & Mark Scheme

Answer:

  • Add sodium hydrogencarbonate (or sodium carbonate). (1 mark)
  • Propanoic acid: effervescence, and the gas turns limewater cloudy. Propan-1-ol: no effervescence. (1 mark)